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DISCOVERER

Regulatory Associations:
- Search for TFs
- Search for Genes
- Search for Associations

Group genes:
- Group by TF
- Group by GO

Pattern Matching:
- Search by DNA Motif
- Find TF Binding Site(s)
- Search Motifs on Motifs

Utilities:
- ORF List ⇔ Gene List
- IUPAC Code Generation
Generate Regulation Matrix

Retrieve:
- TF-Consensus List
- Evidence Code List
- Upstream Sequence
- Flat files

About Yeastract:
- Contact Us
- Cite YEASTRACT
- Acknowledgments
- Credits


Support & suggestions:

KDBIO/INESC-ID IST

Find Described Transcription Factor Binding Sites - Help

BSRG/IST

Index

  1. Summary
  2. Input
  3. Output



1. Summary


This utility searches for all described yeast transcription factor (TF) binding sites within a given nucleotide sequence.

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2. Input

The required input is one or more nucleotide sequences in Fasta format. The ambiguous bases in the input sequences will be disregarded while searching for the TF binding sites.

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3. Output

TF binding sites are searched in both the forward and the reverse strands of the input sequences. The binding sites found are displayed graphically and described in a table, containing information regarding the strand (forward/reverse), the transcription factor, its corresponding consensus sequence and the location in the input sequence.

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