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DISCOVERER

Regulatory Associations:
- Search for TFs
- Search for Genes
- Search for Associations

Group genes:
- Group by TF
- Group by GO

Pattern Matching:
- Search by DNA Motif
- Find TF Binding Site(s)
- Search Motifs on Motifs

Utilities:
- ORF List ⇔ Gene List
- IUPAC Code Generation
Generate Regulation Matrix

Retrieve:
- TF-Consensus List
- Evidence Code List
- Upstream Sequence
- Flat files

About Yeastract:
- Contact Us
- Cite YEASTRACT
- Acknowledgments
- Credits


Support & suggestions:

KDBIO/INESC-ID IST

Retrieve Upstream Sequence - Help

BSRG/IST

Index

  1. Summary
  2. Input
  3. Options
  4. Output



1. Summary


This query retrieves the upstream promoter sequences for a given list of genes.

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2. Input

The input required is a list of genes. The user can choose to, in alternative, retrieve the sequences for all the genes in the database by selecting the option All Saccharomyces Cerevisiae genes.

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3. Options

By default, the output is displayed in the browser (Display), although the results can be sent to a given e-mail in alternative, by selecting the option E-mail and introducing the e-mail address. In addition, the coordinates of the upstream sequences can be altered (between -1 and -1000).

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4. Output

The sequences are retrieved in Fasta format, and are either displayed in the browser or sent to the given e-mail.

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