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Resource |
URI(s) |
Description |
|---|---|---|
Protein |
/protein/{protein} |
Represents a protein. |
Locus |
/locus/{locus} |
Represents a locus (ORF/gene). |
Regulations |
/regulations/{documented,potential,both}?tf={tf1}&tf={tf2}&…&orf={orf1}&orf={orf2}&… |
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Regulation references |
/references/regulation?tf={tf1}&tf={tf2}&...&orf={orf1}&orf={orf2}&... |
Represents a list of references for regulation between transcription factors and an ORF/genes. |
Consensus references |
/references/consensus?tf={tf1}&tf={tf2}&...&tfbs={tfbs1}&tfbs={tfbs2}&... |
Represents a list of references between transcription factors and transcription factor binding sites. |
Retrieves the information about a protein.
A protein name.
Returns the following data for the given protein:
Sample requests using curl:
| parameter | value | description |
|---|---|---|
|
protein |
A protein (transcription factor) name. |
available response representations:
Retrieves the information about an ORF/gene.
An ORF/gene name.
Returns the available information for the locus.
Sample request using curl:
| parameter | value | description |
|---|---|---|
|
orf |
An ORF or a gene name. |
available response representations:
Searches for regulations between the transcription factors (TFs) and genes.
For further documentation, please refer to YEASTRACT's web interface help on the following items:
One or more TFs and/or one or more genes and the type of regulation to search for.
Returns a list of regulations between the transcription factors and the given genes, according to the search type.
Sample request using curl:
| parameter | value | description |
|---|---|---|
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search-type |
One of:
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Searches documented, potential or both types of regulations. If not provided defaults to documented. |
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tf |
A transcription factor. Repeat the parameter to provide multiple transcription factors. | |
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orf |
An ORF orf a gene name. Repeat the parameter to provide multiple ORF/gene names. |
available response representations:
Returns bibliographic references about a regulation between a set of transcription factors and a set of ORF/genes.
Takes as input, optionally, a list of ORF/gene names and a list of transcription factors.
A list of references for the documented regulation between the transcription factors and the ORF/genes.
Sample request using curl:
Returns bibliographic references between transcription factors and transcription factor binding sites.
Takes as input, optionally, a list of transcription factors and a list of transcription factor binding sites.
A list of references for the associations between the transcription factors and the transcription factor binding sites.
Sample request using curl:
| parameter | value | description |
|---|---|---|
|
tf |
A transcription factor. Repeat the parameter to provide multiple transcription factors. | |
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tfbs |
A transcription factor binding site. Repeat the parameter to provide multiple transcription factor binding sites. |
available response representations: