Yeastract IST IBB-BSRG INESC-ID
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Transcription Factor Binding Site Reference(s)

The Yeastract team, is actively curating each transcriptor factor binding site evidence code and environmental condition.
Transcription
Factor
Binding Site Source References Evidence
Code
Environmental
Condition
Pho4p CACGTK BSRG curated PubMed external link Barbaric S et al., Mol Cell Biol, 1998;18(5):2629-39Barbaric S et al., Mol Cell Biol, 1998;18(5):2629-39
PubMed external link Moreno-Herrero F et al., Biochem Biophys Res Commun, 2001;280(1):151-7Moreno-Herrero F et al., Biochem Biophys Res Commun, 2001;280(1):151-7
PubMed external link Oshima Y, Genes Genet Syst, 1997;72(6):323-34Oshima Y, Genes Genet Syst, 1997;72(6):323-34
PubMed external link Rudolph H et al., Proc Natl Acad Sci U S A, 1987;84(5):1340-4Rudolph H et al., Proc Natl Acad Sci U S A, 1987;84(5):1340-4
PubMed external link Venter U et al., EMBO J, 1994;13(20):4848-55Venter U et al., EMBO J, 1994;13(20):4848-55

Consensus sequences are
represented according to
the following IUPAC
frequency table:

IUPAC frequency table
A C G T
A 1 0 0 0
C 0 1 0 0
G 0 0 1 0
T 0 0 0 1
W1/2 0 0 1/2
S 0 1/21/2 0
R1/2 0 1/2 0
Y 0 1/2 0 1/2
M1/21/2 0 0
K 0 0 1/21/2
B 0 1/31/31/3
D1/3 0 1/31/3
H1/31/3 0 1/3
V1/31/31/3 0
N1/41/41/41/4
x1/41/41/41/4
a1/21/61/61/6
c1/61/21/61/6
g1/61/61/21/6
t1/61/61/61/2
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