Yeastract IST INESC-ID IBB-BSRG
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Transcription Factor Binding Site Reference(s)

The Yeastract team, is actively curating each transcriptor factor binding site evidence code and environmental condition.
Transcription
Factor
Binding Site Source References Evidence
Code
Environmental
Condition
Rgt1p CGGANNA BSRG curated PubMed external link Kim JH, Biochimie, 2009;91(2):300-3Kim JH, Biochimie, 2009;91(2):300-3 Direct: EMSA
PubMed external link Kim JH et al., Mol Cell Biol, 2003;23(15):5208-16Kim JH et al., Mol Cell Biol, 2003;23(15):5208-16

Consensus sequences are
represented according to
the following IUPAC
frequency table:

IUPAC frequency table
A C G T
A 1 0 0 0
C 0 1 0 0
G 0 0 1 0
T 0 0 0 1
W1/2 0 0 1/2
S 0 1/21/2 0
R1/2 0 1/2 0
Y 0 1/2 0 1/2
M1/21/2 0 0
K 0 0 1/21/2
B 0 1/31/31/3
D1/3 0 1/31/3
H1/31/3 0 1/3
V1/31/31/3 0
N1/41/41/41/4
x1/41/41/41/4
a1/21/61/61/6
c1/61/21/61/6
g1/61/61/21/6
t1/61/61/61/2
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