S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rim101p	YDR043C	PubMed Lamb TM et al., Mol Cell Biol, 2003 Jan;23(2):677-86	Direct	ChIP	N/A	YC11	Cells expressing Rim101-HAp grown to exponential phase in YPD medium
			Indirect	Northern blot - wt vs TF mutant	Negative	SK1	Cells grown to exponential phase in YPD medium
			Indirect	Microarray analysis - wt vs TF mutant	Negative	SK1	Cells grown to exponential phase in YPD medium
		PubMed Weiss P et al., Eukaryot Cell, 2008 Nov;7(11):1888-94	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Low glucose
		PubMed Mira NP et al., FEMS Yeast Res, 2009 Mar;9(2):202-16	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	20 mM propionic acid (cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2)
		PubMed Yazawa H et al., Yeast, 2009 Mar;26(3):167-84	Indirect	RT-PCR - wt vs TF mutant	Negative	YHU3201	Alkaline stress - 240 mM K2HPO4
		PubMed Nishizawa M et al., Eukaryot Cell, 2010 Jun;9(6):943-51	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	SD medium
		PubMed Zhao Y et al., J Mol Cell Biol, 2013 Oct;5(5):336-44	Direct	ChIP	N/A	S288c	Cells were grown up to A 600 1.0â€“1.5 in 50 ml SD-HIS medium. Nrg 1-HA was detected by the monoclonal anti-HA antibody
		PubMed Read T et al., PLoS Genet, 2016 Jan 11;12(1):e1005746	Indirect	RNA-seq - wt vs TF mutant	Negative	S288c	Cells were grown in standard YPD media to mid-log phase in YPD before RNA isolation