S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rpn4p	YEL037C	PubMed Jelinsky SA et al., Mol Cell Biol, 2000 Nov;20(21):8157-67	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	response to DNA damage (treatment with methyl methanesulfonate - MMS)
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33	Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 40 min
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 60 min
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 80 min
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Karpov DS et al., FEMS Yeast Res, 2017 Jan 1;17(1):	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	no info
		PubMed Spasskaya DS et al., Int J Mol Sci, 2020 Oct 30;21(21):	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	methyl methanesulfonate (MMS) treatment at a final concentration of 0.2% for 30 min
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	no stress
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	4-NQO (2 microg/ml for 45 min)
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C