S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rpn4p	YER012W	PubMed London MK et al., FEBS Lett, 2004;():London MK et al., FEBS Lett, 2004;():	N/A		N/A	S288c	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Ju D et al., Biochem Biophys Res Commun, 2004 Aug 13;321(1):51-7	Indirect	Western blot - wt vs TF overexpression	Positive	S288c	SC medium; mid-log phase
		PubMed Haugen AC et al., Genome Biol, 2004;5(12):R95	Indirect	Microarray analysis - wt vs TF mutant	Positive	BY4741	Synthetic complete medium after 2h exposure to 100 microM AsIII (30.C).
		PubMed Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33	Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 40 min
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 60 min
			Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4742	YPD+1mM selenite 80 min
		PubMed Ju D et al., Int J Biochem Cell Biol, 2010 Feb;42(2):282-6	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Wang X et al., Genetics, 2010 Feb;184(2):335-42	Indirect	RT-PCR - wt vs TF mutant	Positive	YXY210	N/A
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Kruegel U et al., PLoS Genet, 2011 Sep;7(9):e1002253	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Karpov DS et al., FEBS Lett, 2013 Sep 17;587(18):3108-14	Direct	DamID system Wild-type vs Mutated bingind site	N/A	S288c	normal growth conditions
		PubMed Karpov DS et al., FEMS Yeast Res, 2017 Jan 1;17(1):	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	no info
		PubMed Zhang T et al., FEMS Microbiol Lett, 2017 Dec 1;364(22):	Indirect	RT-PCR - wt vs TF mutant	Positive	W303	YPD 30.C
		PubMed Karpov DS et al., FEMS Yeast Res, 2019 Mar 1;19(2):	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4742	no stress
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C