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Regulation Reference(s)
The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Rpn4p
|
YFR004W
|
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Haugen AC et al., Genome Biol, 2004;5(12):R95Haugen AC et al., Genome Biol, 2004;5(12):R95 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
BY4741 |
Synthetic complete medium after 2h exposure to 100 microM AsIII (30.C). |
PubMed
Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33Salin H et al., BMC Genomics, 2008 Jul 15;0(0):33 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
BY4742 |
YPD |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
BY4742 |
YPD+1mM selenite 40 min |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
BY4742 |
YPD+1mM selenite 60 min |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
BY4742 |
YPD+1mM selenite 80 min |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Kruegel U et al., PLoS Genet, 2011 Sep;7(9):e1002253Kruegel U et al., PLoS Genet, 2011 Sep;7(9):e1002253 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Zhang T et al., FEMS Microbiol Lett, 2017 Dec 1;364(22):Zhang T et al., FEMS Microbiol Lett, 2017 Dec 1;364(22): |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
W303 |
YPD 30.C |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
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