S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Rim101p	YGL045W	PubMed Lamb TM et al., Mol Cell Biol, 2003 Jan;23(2):677-86	Direct	ChIP	N/A	YC11	Cells expressing Rim101-HAp grown to exponential phase in YPD medium
			Indirect	Northern blot - wt vs TF mutant	Negative	SK1	Cells grown to exponential phase in YPD medium
			Indirect	Microarray analysis - wt vs TF mutant	Negative	SK1	Cells grown to exponential phase in YPD medium
		PubMed Mira NP et al., FEMS Yeast Res, 2009 Mar;9(2):202-16	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	Exponential phase cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2
		PubMed Boysen JH et al., Eukaryot Cell, 2010 Apr;9(4):532-8	Indirect	RT-PCR - wt vs TF mutant	Negative	BY4741	wt vs DELTArim101 cells after a 120-min shift in YPD plus 0.1 M HEPES at pH 4.0 and pH 8.3
		PubMed Nishizawa M et al., Eukaryot Cell, 2010 Jun;9(6):943-51	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	SD medium
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	YPD medium; mid-log phase
		PubMed Herrador A et al., Mol Biol Cell, 2015 Jun 1;26(11):2128-38	Indirect	Western blot - wt vs TF mutant	Negative	S288c	Cells with RIM8-HA were grown in SD medium to mid log phase (fial pH 3.5), and protein extracts were immunoblotted with anti-HA (top) or anti-actin (bottom) antibodies.
		PubMed Read T et al., PLoS Genet, 2016 Jan 11;12(1):e1005746	Indirect	RNA-seq - wt vs TF mutant	Negative	S288c	Cells were grown in standard YPD media to mid-log phase in YPD before RNA isolation