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Modelling prediction
Essentiality
[metab] Optimisation
manipulating gene expression
manipulating TF expression
Cross species
Promoter analysis
Homologous network
Network comparison
Rank by Unique TFBS
Rank genes
Rank by TF
Rank by GO
Regulatory Associations
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Pattern Matching
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Find TF Binding Site(s)
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IUPAC Code Generation
ORF List ⇔ Gene List
Retrieve
TF-Consensus List
Regulation Matrix
Upstream Sequence
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Regulation Reference(s)
The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References
Evidence
Code
Evidence
Experiment
Association
Type
Strain
Environmental
Condition
Nrg2p
YHR043C
PubMed
Vyas VK et al., Genetics, 2001 Jun;158(2):563-72
Vyas VK et al., Genetics, 2001 Jun;158(2):563-72
Indirect
lacZ - wt vs TF mutant
Negative
MCY3912 (MATa ade2 his3 leu2 lys2 trp1 ura3)
Cells grown in SC medium containing 2% glucose
Indirect
lacZ - wt vs TF mutant
Negative
MCY3912 (MATa ade2 his3 leu2 lys2 trp1 ura3)
Glucose-derepression; cells grown to mid-log phase in SC-Ura + 2% glucose and then shifted to SC-Ura + 0.05% glucose for 3 h