S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Swi4p	YML027W	PubMed Iyer VR et al., Nature, 2001 Jan 25;409(6819):533-8	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Horak CE et al., Genes Dev, 2002 Dec 1;16(23):3017-33	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Bean JM et al., Genetics, 2005 Sep;171(1):49-61	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Expression along cell cycle
		PubMed Workman CT et al., Science, 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71	Direct	ChIP	N/A	S288c	N/A
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Hendler A et al., PLoS Genet, 2017 May 15;13(5):e1006778	Indirect	RNA-seq - wt vs TF mutant	Positive	W303	100ng/ml of alpha factor
			Indirect	RNA-seq - wt vs TF mutant	Positive	15Daub	Strains were synchronized with alpha-factor and gene Indirect was measured at two time points (0, 30 minutes) after release.Â