S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Swi4p	YNL289W	PubMed Ogas J et al., Cell, 1991 Sep 6;66(5):1015-26	N/A		N/A	S288c	N/A
		PubMed Iyer VR et al., Nature, 2001 Jan 25;409(6819):533-8	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Simon I et al., Cell, 2001 Sep 21;106(6):697-708	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Bean JM et al., Genetics, 2005 Sep;171(1):49-61	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Expression along cell cycle
		PubMed Workman CT et al., Science, 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
		PubMed Venters BJ et al., Genome Res, 2009 Mar;19(3):360-71	Direct	ChIP	N/A	S288c	N/A
		PubMed Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase
		PubMed Hendler A et al., PLoS Genet, 2017 May 15;13(5):e1006778	Direct	ChIP	N/A	15Daub	Alpha factor arrested culturesÂ
			Indirect	RNA-seq - wt vs TF mutant	Positive	15Daub	Strains were synchronized with alpha-factor and gene Indirect was measured at two time points (0, 30 minutes) after release.Â
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C