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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Condition
Hsf1p YAL005C PubMed external link Smith BJ et al., Mol Cell Biol, 1991 May;11(5):2647-55Smith BJ et al., Mol Cell Biol, 1991 May;11(5):2647-55 Indirect Northern blot - wt vs TF mutant Positive S288c Cells were grown in SD medium at 23°C. Cells were harvested 30 min after a shift to 37°C
PubMed external link Halladay JT et al., Mol Cell Biol, 1995 Sep;15(9):4890-7Halladay JT et al., Mol Cell Biol, 1995 Sep;15(9):4890-7 Direct EMSA N/A S288c in vitro
PubMed external link Young MR et al., Mol Cell Biol, 1993 Sep;13(9):5637-46Young MR et al., Mol Cell Biol, 1993 Sep;13(9):5637-46 Direct EMSA N/A S288c in vitro
PubMed external link Boy-Marcotte E et al., Mol Microbiol, 1999 Jul;33(2):274-83Boy-Marcotte E et al., Mol Microbiol, 1999 Jul;33(2):274-83 Indirect Proteomics - wt vs TF mutant Positive MYY290 Heat-shock: Exponential-phase cells shifted from 25C to 38C
PubMed external link Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c YPD medium; mid-log phase
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c N/A
PubMed external link Yamamoto A et al., J Biol Chem, 2005 Mar 25;280(12):11911-9Yamamoto A et al., J Biol Chem, 2005 Mar 25;280(12):11911-9 Indirect Northern blot - wt vs TF mutant Positive S288c YPD medium 39ºC (heat shock)
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h
PubMed external link Hou J et al., FEMS Yeast Res, 2014 May;14(3):481-94Hou J et al., FEMS Yeast Res, 2014 May;14(3):481-94 Indirect Microarray analysis - wt vs TF overexpression Positive S288c DTT inhibition
PubMed external link Solís EJ et al., Mol Cell, 2016 Jul 7;63(1):60-71Solís EJ et al., Mol Cell, 2016 Jul 7;63(1):60-71 Indirect Net-seq Positive S288c basal conditions
PubMed external link de Jonge WJ et al., EMBO J, 2017 Feb 1;36(3):274-290de Jonge WJ et al., EMBO J, 2017 Feb 1;36(3):274-290 Direct ChIP N/A S288C SC medium
Indirect RT-PCR - wt vs TF mutant Negative S288C SC medium
PubMed external link Krakowiak J et al., Elife, 2018 Feb 2;7(0):e31668Krakowiak J et al., Elife, 2018 Feb 2;7(0):e31668 Indirect Western blot - wt vs TF mutant Positive W303 SDC media
PubMed external link Pincus D et al., Mol Biol Cell, 2018 Dec 15;29(26):3168-3182Pincus D et al., Mol Biol Cell, 2018 Dec 15;29(26):3168-3182 Direct ChIP-seq N/A BY4741 YPDA (with 0.002% adenine), non-heat shock, 5´heat shock and 120´heat shock (39.C))
Direct ChIP-seq N/A BY4741 YPDA (with 0.002% adenine) Rapamycin (1 microM), non-heat shock
Direct ChIP-seq N/A BY4741 YPDA (with 0.002% adenine), 5' heat shock
Indirect NAC-seq (nascent mRNA-sequencing) Positive BY4741 YPDA (with 0.002% adenine) Rapamycin (1 microM), non-heat shock
Indirect NAC-seq (nascent mRNA-sequencing) Positive BY4741 YPDA (with 0.002% adenine), 5' heat shock
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 YPD medium, 25.C
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