Yeastract
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Condition
Pho4p YDR481C PubMed external link Barbarić S et al., Nucleic Acids Res, 1992 Mar 11;20(5):1031-8Barbarić S et al., Nucleic Acids Res, 1992 Mar 11;20(5):1031-8 Direct EMSA N/A S288c in vitro
PubMed external link Hayashi N et al., Mol Cell Biol, 1991 Feb;11(2):785-94Hayashi N et al., Mol Cell Biol, 1991 Feb;11(2):785-94 Direct EMSA N/A S288c in vitro
PubMed external link Munsterkötter M et al., J Biol Chem, 2000 Jul 28;275(30):22678-85Munsterkötter M et al., J Biol Chem, 2000 Jul 28;275(30):22678-85 Direct lacZ - wt vs mutant promoter sequence Positive S288c Phosphate depletion
PubMed external link Ogawa N et al., Mol Biol Cell, 2000 Dec;11(12):4309-21Ogawa N et al., Mol Biol Cell, 2000 Dec;11(12):4309-21 Indirect Microarray analysis - wt vs TF mutant Positive S288c Exponential phase cells cultivated in YPD
PubMed external link Huang D et al., Mol Cell Biol, 2002 Jul;22(14):5076-88Huang D et al., Mol Cell Biol, 2002 Jul;22(14):5076-88 Indirect Microarray analysis - wt vs TF mutant Positive BY263 Cells grown to log phase in YPD medium
PubMed external link Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50Chua G et al., Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF mutant Positive N/A Cells grown in synthetic medium supplemented with 2% dextrose
PubMed external link Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30Nishizawa M et al., PLoS Biol, 2008 Dec 23;6(12):2817-30 Direct ChIP N/A S288c YNB medium without phosphate + 2mM (high Pi)
PubMed external link Aow JS et al., Nucleic Acids Res, 2013 May;41(9):4877-87Aow JS et al., Nucleic Acids Res, 2013 May;41(9):4877-87 Direct ChIP N/A S288c low phosphate
PubMed external link Tsang F et al., J Biol Chem, 2015 May 15;290(20):12753-64Tsang F et al., J Biol Chem, 2015 May 15;290(20):12753-64 Indirect RT-PCR - wt vs TF mutant Positive S288c Control
PubMed external link He et al., Elife, 2017;6(0):e25157He et al., Elife, 2017;6(0):e25157 Indirect RNA-seq - wt vs TF mutant Positive EY0057 pho80DELTA EY0057 pho80DELTA; Minimal medium; mid-log phase
PubMed external link Gurvich Y et al., PLoS Biol, 2017 Dec 13;15(12):e2002039Gurvich Y et al., PLoS Biol, 2017 Dec 13;15(12):e2002039 Indirect RNA-seq - wt vs TF mutant Positive BY4741 BY4741; SC medium; Phosphate(i) starvation condition; 30.C; mid-log phase
Indirect RNA-seq - wt vs TF mutant Positive BY4741 PHO4SA12346 allele BY4741 PHO4SA12346 allele ; SC medium; Low P(i) concentration; 30.C; mid-log phase
Indirect RNA-seq - wt vs TF mutant Positive BY4741 PHO84-constitutive BY4741 PHO84c; SC medium; yeast cell recovery into 20mM P(i) from low P(i); 30.C; 2h growth
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