The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Rtg3p
|
YEL071W
|
PubMed
Chelstowska A et al., Yeast, 1999 Sep 30;15(13):1377-91Chelstowska A et al., Yeast, 1999 Sep 30;15(13):1377-91 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Chen S et al., J Biol Chem, 2010 Apr 2;285(14):10397-407Chen S et al., J Biol Chem, 2010 Apr 2;285(14):10397-407 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
SD medium early stationary phase |
PubMed
Ruiz-Roig C et al., Mol Biol Cell, 2012 Nov;23(21):4286-96Ruiz-Roig C et al., Mol Biol Cell, 2012 Nov;23(21):4286-96 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
NaCl (osmotic stress) |
PubMed
Barreto L et al., Environ Microbiol, 2012 Nov;14(11):3026-42Barreto L et al., Environ Microbiol, 2012 Nov;14(11):3026-42 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
S288c |
Without KCl |
PubMed
Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
PubMed
Chow J et al., Genetics, 2019 Jul;212(3):667-690Chow J et al., Genetics, 2019 Jul;212(3):667-690 |
Indirect |
RNA-seq - wt vs TF mutant |
Positive |
PC538 |
YEP-Gal solid medium for 24 hr |
PubMed
Romero AM et al., Biochim Biophys Acta Gene Regul Mech, 2019 Sep;1862(9):194414Romero AM et al., Biochim Biophys Acta Gene Regul Mech, 2019 Sep;1862(9):194414 |
Indirect |
RT-PCR - wt vs TF mutant |
Positive |
BY4741 |
30.C in SC (+Fe) and SC with 100 microM BPS (-Fe) for 9 hours |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
|