Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor
Target
ORF/Genes
References Evidence
Code
Evidence
Experiment
Association
Type
Strain Environmental
Condition
Sfl1p YIR019C PubMed external link van Dyk D et al., Genetics, 2005 Jan;169(1):91-106van Dyk D et al., Genetics, 2005 Jan;169(1):91-106 Indirect Northern blot - wt vs TF mutant Negative S288c SCD medium
PubMed external link Jin R et al., Mol Biol Cell, 2008 Jan;19(1):284-96Jin R et al., Mol Biol Cell, 2008 Jan;19(1):284-96 Indirect GFP - wt vs TF mutant Negative S288c filamentous growth inducing conditions
PubMed external link Fischer C et al., FEMS Yeast Res, 2008 Mar;8(2):225-36Fischer C et al., FEMS Yeast Res, 2008 Mar;8(2):225-36 Indirect Northern blot - wt vs TF mutant Positive S288c 3-aminotriazole
PubMed external link Fichtner L et al., Mol Microbiol, 2007 Dec;66(5):1276-89Fichtner L et al., Mol Microbiol, 2007 Dec;66(5):1276-89 Indirect RT-PCR - wt vs TF mutant Negative S288C wt versus TF mutant Sc media OD:0.7
PubMed external link Chavel CA et al., PLoS Genet, 2010 Mar 19;6(3):e1000883Chavel CA et al., PLoS Genet, 2010 Mar 19;6(3):e1000883 Indirect RT-PCR - wt vs TF mutant Negative SIGMA1278b wt vs DELTAsfl1: total RNA was isolated from 25 ml cultures grown in YEP GAL for 8h.
PubMed external link Torbensen R et al., PLoS One, 2012;7(7):e41272Torbensen R et al., PLoS One, 2012;7(7):e41272 Indirect Northern blot - wt vs TF mutant Negative S288c YPD medium; mid-log phase
PubMed external link Scherz K et al., G3 (Bethesda), 2014 Jul 9;4(9):1671-80Scherz K et al., G3 (Bethesda), 2014 Jul 9;4(9):1671-80 Indirect RNA FISH Negative S288c DELTAsfl1 grown for 96 hr in square 120-mm · 120-mm Petri dishes in Synthetic complete (SC) media and amino acids: adenine sulfate 20 mg/liter; uracil 38 mg/liter; Lhistidine 38 mg/liter; L-arginine 38 mg/liter; L-tryptophan 38 mg/liter; L-methoinine 38 mg/liter; L-tyrosine 15 mg/liter; L-leucine 57 mg/liter;L-isoleucine 57 mg/liter; L-lysine 57 mg/liter; L-phenylalanine 48 mg/liter; L-valine 57 mg
PubMed external link Mayhew D et al., Mol Biol Cell, 2014 Sep 1;25(17):2669-76Mayhew D et al., Mol Biol Cell, 2014 Sep 1;25(17):2669-76 Direct Multiplex calling card analysis N/A S288c Nitrogen starvation
PubMed external link Taylor MB et al., PLoS Genet, 2015 Oct 20;11(10):e1005606Taylor MB et al., PLoS Genet, 2015 Oct 20;11(10):e1005606 Indirect RT-PCR - wt vs TF mutant Negative S288c S3 and DELTAsfl1 (S3) cells were grown to stationary phase in liquid YPD media at 30.C and pinned on to YPE agar plates. After four days of growth at 30.C, total RNA was extracted with the Qiagen Rneasy kit
PubMed external link Regenberg B et al., Proc Biol Sci, 2016 Nov 16;283(1842):Regenberg B et al., Proc Biol Sci, 2016 Nov 16;283(1842): Indirect RNA FISH Negative S288c DELTAsfl1
PubMed external link Cromie GA et al., G3 (Bethesda), 2017 Aug 7;7(8):2845-2854Cromie GA et al., G3 (Bethesda), 2017 Aug 7;7(8):2845-2854 Indirect RNA-seq - wt vs TF overexpression Negative F45 4 days growth YPD, 30.C
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