S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Pho4p	YAR071W	PubMed Ogawa N et al., Molecular biology of the cell, 2000 Dec;11(12):4309-21	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	Exponential phase cells cultivated in YPD	N/A
		PubMed Huang D et al., Molecular and cellular biology, 2002 Jul;22(14):5076-88	Indirect	Microarray analysis - wt vs TF mutant	Positive	BY263	Unstressed log-phase growth (control)	Cells grown to log phase in YPD medium	N/A
		PubMed Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF mutant	Positive	N/A	Unstressed log-phase growth (control)	Cells grown in synthetic medium supplemented with 2% dextrose	N/A
			Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Carbon source quality/availability	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-0.54748251644555
		PubMed He BZ et al., eLife, 2017 May 9;6():He BZ et al., eLife, 2017 May 9;6():	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Unstressed log-phase growth (control)	100 ml of cell culture grown to OD600nm (600 nm) of 1.5.	8.05956372820869
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Grown in phosphate-free SC medium (Phosphate starvation) at 30°C with shaking. All transcriptional profiling experiments were done in the pho80∆ background. Transcription factor gene deletion.	8.05956372820869
		PubMed Gurvich Y et al., PLoS biology, 2017 Dec;15(12):e2002039	Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741	Ion/metal/phosphate/sulfur/vitamin availability	BY4741; SC medium; Phosphate(i) starvation condition; 30.C; mid-log phase	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741 PHO84-constitutive	Ion/metal/phosphate/sulfur/vitamin availability	BY4741 PHO84c; SC medium; yeast cell recovery into 20mM P(i) from low P(i); 30.C; 2h growth	N/A