Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rap1p YBL043W PubMed external link Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9 Direct Chip-on-chip N/A S288c N/A N/A N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.87219983753385
PubMed external link Buechel ER et al., FEBS letters, 2024 Jan;598(2):169-186Buechel ER et al., FEBS letters, 2024 Jan;598(2):169-186 Direct ChEC-seq2 N/A BY4741 Unstressed log-phase growth (control) Control N/A
PubMed external link Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47 Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Carbon source quality/availability YPD medium (15h) (diauxic shift) -1.72281943088256
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 15h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -3.30080847578957