S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition
Ste12p	YBR083W	PubMed Madhani HD et al., Science, 1997 Feb 28;275(5304):1314-7	Direct	DNA footprinting	N/A	S288c	in vitro
		PubMed Oehlen L et al., FEBS Lett, 1998 Jun 5;429(1):83-8	N/A		N/A	S288c	N/A
		PubMed Madhani HD et al., Proc Natl Acad Sci U S A, 1999 Oct 26;96(22):12530-5	Indirect	Microarray analysis - WT vs TF mutant	Negative	S288c	Pseudohyphal growth conditions (4h of growth in yeast nitrogen base containing 50 Î¼M ammonium sulfate)
		PubMed Lee TI et al., Science, 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed KÃ¶hler T et al., Eukaryot Cell, 2002 Oct;1(5):673-86	Indirect	Western blot - WT vs TF mutant	Positive	S288c	cells grown to mid log phase in synthetic medium
		PubMed Zeitlinger J et al., Cell, 2003 May 2;113(3):395-404	Direct	Chip-on-chip	N/A	S288c	YPD medium + 1% butanol (filamentous growth)
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase
		PubMed Borneman AR et al., Genes Dev, 2006 Feb 15;20(4):435-48	Direct	Chip-on-chip	N/A	S288c	Low nitrogen (SLAD) medium
		PubMed Borneman AR et al., Funct Integr Genomics, 2007 Oct;7(4):335-45	Direct	Chip-on-chip	N/A	S288c	N/A
		PubMed LefranÃ§ois P et al., BMC Genomics, 2009;():	Direct	ChIP-seq	N/A	S288c	Pseudohyphal growth conditions (nitrogen depleted SLAD medium)
		PubMed Zheng W et al., Nature, 2010 Apr 22;464(7292):1187-91	Direct	ChIP-seq	N/A	S288c	YPD medium + alpha-factor
		PubMed Chow J et al., Genetics, 2019 Jul;212(3):667-690	Indirect	RNA-seq - WT vs TF mutant	Positive	PC538	YEP-Gal solid medium for 24 hr
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C