S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Pho2p	YBR093C	PubMed Vogel K et al., Molecular and cellular biology, 1989 May;9(5):2050-7	N/A		N/A	S288c	N/A	N/A	N/A
		PubMed Shen H et al., The Journal of biological chemistry, 1998 May 8;273(19):11638-42	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Ion/metal/phosphate/sulfur/vitamin availability	phosphate starvation; cells grown in phosphate-free synthetic medium	N/A
		PubMed Terrell AR et al., The Journal of biological chemistry, 2002 Aug 23;277(34):31038-47	Direct	EMSA	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	Phosphate depletion	N/A
		PubMed Neef DW et al., Molecular and cellular biology, 2003 Jun;23(11):3788-97	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Springer M et al., PLoS biology, 2003 Nov;1(2):E28	Indirect	Northern blot - wt vs TF mutant	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Cells were grown in synthetic medium with dextrose (SD) and in high-, intermediate-, or no-phosphate.	N/A
		PubMed Pinson B et al., Genes & development, 2009 Jun 15;23(12):1399-407	Direct	ChIP	N/A	ade16 ade17 double mutant	Unstressed log-phase growth (control)	SDcasaWAU medium	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	1.1444305558102
		PubMed Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432	Indirect	Microarray analysis - WT vs TF Deletion	Positive	FY4	Unstressed log-phase growth (control)	Grown in minimal medium batch cultures with 10 g/L glucose at 30°C, 300 rpm and exponential growth. Transcription factor gene deletion.	0.223
		PubMed Kang HJ et al., The Biochemical journal, 2014 Feb 1;457(3):391-400	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Ion/metal/phosphate/sulfur/vitamin availability	Low Pi YPD	N/A
		PubMed He BZ et al., eLife, 2017 May 9;6():He BZ et al., eLife, 2017 May 9;6():	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Unstressed log-phase growth (control)	100 ml of cell culture grown to OD600nm (600 nm) of 1.5.	8.23604112204016
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Grown in phosphate-free SC medium (Phosphate starvation) at 30°C with shaking. All transcriptional profiling experiments were done in the pho80∆ background. Transcription factor gene deletion.	8.23604112204016