S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Pho4p	YBR093C	PubMed Vogel K et al., Molecular and cellular biology, 1989 May;9(5):2050-7	Direct	DNA footprinting	N/A	S288c	N/A	N/A	N/A
		PubMed Shen H et al., The Journal of biological chemistry, 1998 May 8;273(19):11638-42	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Ion/metal/phosphate/sulfur/vitamin availability	phosphate starvation; cells grown in phosphate-free synthetic medium	N/A
		PubMed Ogawa N et al., Molecular biology of the cell, 2000 Dec;11(12):4309-21	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	Exponential phase cells cultivated in YPD	N/A
		PubMed Moreno-Herrero F et al., Biochemical and biophysical research communications, 2001 Jan 12;280(1):151-7	Direct	EMSA	N/A	S288c	N/A	N/A	N/A
		PubMed Terrell AR et al., The Journal of biological chemistry, 2002 Aug 23;277(34):31038-47	Direct	EMSA	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	Phosphate depletion	N/A
		PubMed Neef DW et al., Molecular and cellular biology, 2003 Jun;23(11):3788-97	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF mutant	Positive	N/A	Unstressed log-phase growth (control)	Cells grown in synthetic medium supplemented with 2% dextrose	N/A
			Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Carbon source quality/availability	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h	N/A
		PubMed Nishizawa M et al., Eukaryotic cell, 2008 Jun;7(6):949-57	Direct	ChIP	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	low Pi (SD medium supplemented only with 0.2 uM sodium Pi)	N/A
		PubMed Nishizawa M et al., PLoS biology, 2008 Dec 23;6(12):2817-30	Direct	Chip-on-chip	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	YNB medium without phosphate + 0,2microM (low Pi; phosphate limitation)	N/A
		PubMed He Y et al., Molecular microbiology, 2012 Jan;83(2):395-407	Direct	ChIP	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	low phosphate medium no inositol and choline	N/A
		PubMed Aow JS et al., Nucleic acids research, 2013 May;41(9):4877-87	Direct	ChIP	N/A	S288c	Ion/metal/phosphate/sulfur/vitamin availability	low phosphate	N/A
		PubMed He BZ et al., eLife, 2017 May 9;6():He BZ et al., eLife, 2017 May 9;6():	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Unstressed log-phase growth (control)	100 ml of cell culture grown to OD600nm (600 nm) of 1.5.	8.37052904727163
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Grown in phosphate-free SC medium (Phosphate starvation) at 30°C with shaking. All transcriptional profiling experiments were done in the pho80∆ background. Transcription factor gene deletion.	8.37052904727163
		PubMed Gurvich Y et al., PLoS biology, 2017 Dec;15(12):e2002039	Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741	Ion/metal/phosphate/sulfur/vitamin availability	BY4741; SC medium; Phosphate(i) starvation condition; 30.C; mid-log phase	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BY4741 PHO4SA12346 allele	Ion/metal/phosphate/sulfur/vitamin availability	BY4741 PHO4SA12346 allele ; SC medium; Low P(i) concentration; 30.C; mid-log phase	N/A