Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Ixr1p YBR291C PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 0.33666591277685
PubMed external link Vizoso-Vázquez A et al., Applied microbiology and biotechnology, 2012 Apr;94(1):173-84Vizoso-Vázquez A et al., Applied microbiology and biotechnology, 2012 Apr;94(1):173-84 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741 Unstressed log-phase growth (control) Grown in SC medium with defined amino acid supplements and 2% glucose at 30 °C, in Erlenmeyer flasks filled to 40% volume and shaken at 250 rpm. Transcription factor gene deletion. 0.97454871
Indirect Microarray analysis - WT vs TF Deletion Negative BY4741 Oxygen availability Grown in SC medium with defined amino acid supplements and 2% glucose at 30 °C, in Erlenmeyer flasks filled to 40% volume and shaken at 250 rpm. Cells incubated overnight in anaerobic jars with ergosterol and Tween 80 supplementation, 20 mg/L ergosterol and 0.5%, respectively. Transcription factor gene deletion in hypoxic condition. -1.05418045
PubMed external link Krakowiak J et al., eLife, 2018 Feb 2;7():Krakowiak J et al., eLife, 2018 Feb 2;7(): Indirect Microarray analysis - WT vs TF Deletion Positive W303a Unstressed log-phase growth (control) Grown overnight in complete SD medium with specific amino acid supplements and 2% glucose, then diluted to OD600 0.4 in fresh medium and cultured at 30 °C with shaking until mid-log phase (OD600 0.6). Transcription factor gene deletion. 0.86020667
Indirect Microarray analysis - WT vs TF Deletion Positive W303a Stress Grown overnight in complete SD medium with specific amino acid supplements and 2% glucose, then diluted to OD600 0.4 in fresh medium and cultured at 30 °C with shaking until mid-log phase (OD600 0.6). Cisplatin treatment (600 μM in DMSO), incubated for 4 hours at 30 °C in the dark with agitation. Transcription factor gene deletion. 0.33245333