Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Bas1p YCL030C PubMed external link Arndt KT et al., Science (New York, N.Y.), 1987 Aug 21;237(4817):874-80Arndt KT et al., Science (New York, N.Y.), 1987 Aug 21;237(4817):874-80 N/A N/A S288c N/A N/A N/A
PubMed external link Denis V et al., Molecular microbiology, 1998 Nov;30(3):557-66Denis V et al., Molecular microbiology, 1998 Nov;30(3):557-66 Indirect Proteomics - wt vs TF mutant Positive L3079 Unstressed log-phase growth (control) SD media, mid-exponential N/A
PubMed external link Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD medium; mid-log phase N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) SC medium; mid-log phase N/A
PubMed external link Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69 Indirect Northern blot - wt vs TF mutant Negative S288c Nitrogen source quality/availability Minimal B medium upon glycine removal N/A
PubMed external link Tournu H et al., Eukaryotic cell, 2005 Oct;4(10):1687-96Tournu H et al., Eukaryotic cell, 2005 Oct;4(10):1687-96 Direct ChIP N/A S288c Unstressed log-phase growth (control) Exponential-phase cells cultivated in SC growth medium without adenine N/A
PubMed external link Joo YJ et al., Eukaryotic cell, 2009 Aug;8(8):1268-77Joo YJ et al., Eukaryotic cell, 2009 Aug;8(8):1268-77 Indirect Northern blot - wt vs TF mutant Positive S288c Nitrogen source quality/availability SC medium w/o histidine N/A
PubMed external link Sellam A et al., Eukaryotic cell, 2010 Apr;9(4):634-44Sellam A et al., Eukaryotic cell, 2010 Apr;9(4):634-44 Direct ChIP N/A S288c In vitro in vitro N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 1.181601437222
PubMed external link Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432 Indirect Microarray analysis - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) YPD medium; mid-log phase N/A
PubMed external link Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16 Indirect RNA-seq analysis - WT vs TF Deletion Positive SK1 Unstressed log-phase growth (control) Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h. 0.672104014501204
Indirect RNA-seq analysis - WT vs TF Deletion Positive SK1 Cell cycle/morphology Cells were grown in YPA for 13.5–14 hr at 30°, harvested, resuspended in 2% potassium acetate, and sporulated at 30°. Then, 15 OD600 units of cells were collected at 4 hr in meiosis for RNAseq. Transcription factor gene deletion. 0.672104014501204
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A