S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Msn4p	YCL040W	PubMed Boy-Marcotte E et al., Journal of bacteriology, 1998 Mar;180(5):1044-52	Indirect	Proteomics - wt vs TF mutant	Positive	W303	Unstressed log-phase growth (control)	YNB medium	N/A
		PubMed Boy-Marcotte E et al., Molecular microbiology, 1999 Jul;33(2):274-83	Indirect	Proteomics - wt vs TF mutant	Positive	W303-A	Stress	Heat-shock: Exponential-phase cells shifted from 25C to 38C	N/A
		PubMed Herrero P et al., The Biochemical journal, 1999 Oct 15;343 Pt 2(Pt 2):319-25	Direct	EMSA	N/A	S288c	Carbon source quality/availability	Yeasts were grown on 1% (w}v) yeast extract and 2% (w}v) peptone supplemented with 3% (v}v) ethanol (YEPE) at 28 °C until the OD600nm reached 1.0 (early log phase)	N/A
		PubMed Tadi D et al., Yeast (Chichester, England), 1999 Dec;15(16):1733-45	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Carbon source quality/availability	Diauxic shift; Late-exponential phase cells cultivated in YNB growth medium (0Â·17% yeast nitrogen base, 0Â·5% ammonium sulphate and 2% glucose)	N/A
		PubMed Garcia SC et al., FEMS microbiology letters, 2000 Mar 15;184(2):219-24	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD + 0,5M NaCl	N/A
		PubMed Hasan R et al., Molecular microbiology, 2002 Jul;45(1):233-41	Indirect	Proteomics - wt vs TF mutant	Positive	YPH98	Stress	Oxidative stess; cells grown in YNB medium to exponential phase exposed to 0.5 mM H2O2 for 30 min	N/A
			Indirect	2D electrophoresis (WT vs msn2DELTAmsn4DELTAyap1DELTA triple mutant)	Positive	YPH98	Stress	Oxidative stess; cells grown in YNB medium to exponential phase exposed to 0.5 mM H2O2 for 30 min	N/A
		PubMed Eastmond DL et al., The Journal of biological chemistry, 2006 Oct 27;281(43):32909-21	Indirect	Microarray analysis - wt vs TF mutant	Positive	W303-1A	Stress	Cells grown in YPAD at 30.C to mid-log phase (A600 of 0.5) submitted to heat-shock (37.C, 15 min)	N/A
		PubMed Capaldi AP et al., Nature genetics, 2008 Nov;40(11):1300-6	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD medium containing 0,8M glucose (glucose "osmotic" stress)	N/A
		PubMed Hazelwood LA et al., Applied and environmental microbiology, 2009 Nov;75(21):6876-85	Indirect	Microarray analysis - wt vs TF mutant	Positive	IMZ066	Carbon source quality/availability	Carbon-limiting (25 g/L glucose, 5 g/L (NH4)2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O)	N/A
		PubMed Casado C et al., The Biochemical journal, 2011 Sep 15;438(3):523-33	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	10 min shift to pH=8	N/A
		PubMed Kuang Z et al., eLife, 2017 Sep 26;6():Kuang Z et al., eLife, 2017 Sep 26;6():	Direct	ChIP-seq	N/A	BY5764	Unstressed log-phase growth (control)	YPD 30.C	N/A