S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Swi5p	YDL179W	PubMed Aerne BL et al., Molecular biology of the cell, 1998 Apr;9(4):945-56	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Tennyson CN et al., Molecular microbiology, 1998 Apr;28(1):69-79	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Cell cycle/morphology	Cultures were grown in YPD at 30ºC until reaching an OD600 of 0.3, at which point a log-phase cell sample was collected. The mating pheromone a-factor was then added to the remainder of the culture to a ?nal concentration of 5mM. The culture was grown at 30ºC for 2 h and 45 min, by which time a majority of the cells had arrested in G1 phase. The a-factor was removed by washing the cells in col	N/A
		PubMed McBride HJ et al., The Journal of biological chemistry, 1999 Jul 23;274(30):21029-36	Direct	DNA footprinting	Positive	W303	Unstressed log-phase growth (control)	Exponential-phase cells cultivated in synthetic growth medium	N/A
		PubMed Madhani HD et al., Proceedings of the National Academy of Sciences of the United States of America, 1999 Oct 26;96(22):12530-5	Direct	ChIP	N/A	S288c	Cell cycle/morphology	Exponential phase cells cultivated in YPD growth medium (15 minutes after cell-cycle synchronization)	N/A
		PubMed Simon I et al., Cell, 2001 Sep 21;106(6):697-708	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Voth WP et al., The EMBO journal, 2007 Oct 17;26(20):4324-34	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	0.37935546222077
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	Unstressed log-phase growth (control)	YPD medium, 25.C	N/A