S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Msn4p	YDR074W	PubMed Schmitt AP et al., Proceedings of the National Academy of Sciences of the United States of America, 1996 Jun 11;93(12):5777-82	Indirect	Northern blot - wt vs TF overexpression	Positive	S288c	Stress	Methylmethane sulfonate stress	N/A
		PubMed Garcia SC et al., FEMS microbiology letters, 2000 Mar 15;184(2):219-24	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD + 0,5M NaCl	N/A
		PubMed Kandror O et al., Molecular cell, 2004 Mar 26;13(6):771-81	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	Cold stress; Cells cultivated for 24h at 0ºC in YP growth medium with galactose as carbon source	N/A
		PubMed Lai LC et al., Molecular and cellular biology, 2005 May;25(10):4075-91	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Oxygen availability	SSGal-TEA medium + anaerobiosis (0,08 generations)	N/A
		PubMed Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Horan S et al., Yeast (Chichester, England), 2006 May;23(7):519-35	Indirect	Microarray analysis - wt vs TF mutant	Positive	W303-1B	Stress	Cells harvested 60 min after treatment with 3 mM NO donor (Z)-1-[2-(2-aminoethyl)-N-(2-ammonioethyl) aminodiazen-1-ium-1,2-diolate (DETA NONOate)	N/A
		PubMed Berry DB et al., Molecular biology of the cell, 2008 Nov;19(11):4580-7	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Stress	YPD+0.7 M NaCl 45min	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Stress	YPD e 30-37.C heat shock 15min	N/A
		PubMed Capaldi AP et al., Nature genetics, 2008 Nov;40(11):1300-6	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD medium containing 0,8M glucose (glucose "osmotic" stress)	N/A
		PubMed Hazelwood LA et al., Applied and environmental microbiology, 2009 Nov;75(21):6876-85	Indirect	Microarray analysis - wt vs TF mutant	Positive	IMZ066	Nitrogen source quality/availability	Nitrogen-limiting (45 g/L glucose, 1 g/L (NH4)2SO4, 5.3 g/L K2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O)	N/A
		PubMed Watanabe D et al., Applied and environmental microbiology, 2011 Feb;77(3):934-41	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Complex industrial media	Sake mash on day 5	N/A
		PubMed Casado C et al., The Biochemical journal, 2011 Sep 15;438(3):523-33	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	10 min shift to pH=8	N/A
		PubMed Sadeh A et al., Molecular biology of the cell, 2011 Sep;22(17):3127-38	Indirect	GFP - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	SC medium; mid-log phase	N/A
		PubMed Kuang Z et al., eLife, 2017 Sep 26;6():Kuang Z et al., eLife, 2017 Sep 26;6():	Direct	ChIP-seq	N/A	BY5764	Unstressed log-phase growth (control)	YPD 30.C	N/A