Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Swi4p YER011W PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD medium; mid-log phase N/A
PubMed external link Badis G et al., Molecular cell, 2008 Dec 26;32(6):878-87Badis G et al., Molecular cell, 2008 Dec 26;32(6):878-87 Direct ChIP N/A S288c N/A N/A N/A
PubMed external link Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778 Indirect RNA-seq analysis - WT vs TF Deletion Positive 15Daub Unstressed log-phase growth (control) Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition 0.48849230697226
Indirect RNA-seq analysis - WT vs TF Deletion Positive 15Daub Cell cycle/morphology Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and after 30 minutes they were collected. Transcription factor gene deletion. 0.48849230697226
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A