Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rph1p YFL061W PubMed external link Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346 Indirect Microarray analysis - WT vs TF Deletion Positive SLY34 Unstressed log-phase growth (control) Grown in rich medium (YPD) at 30 °C to log phase. Transcription factor gene deletion. 0.592608
PubMed external link Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62 Indirect Microarray analysis - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) YPD 30.C N/A
PubMed external link Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Carbon source quality/availability Ethanol medium - Overexpression media lacked leucine to ensure plasmid selection. The cultures grown for 70 h in ethanol medium were diluted twice with a fresh medium to ensure continuous growth. 0.624933058403579
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Nitrogen source quality/availability Grown in YPD to OD600 of 0.8 at 30 ºC. Treated with rapamycin for 2h (100 nM). Transcription factor gene deletion. 0.624933058403579