Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rap1p YGL007W PubMed external link Lieb JD et al., Nature genetics, 2001 Aug;28(4):327-34Lieb JD et al., Nature genetics, 2001 Aug;28(4):327-34 Direct Chip-on-chip N/A S288c N/A N/A N/A
PubMed external link Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5Lickwar CR et al., Nature, 2012 Apr 11;484(7393):251-5 Direct ChIP N/A S288c Cell cycle/morphology Cells arrested at G1 phase with alpha-factor cultivated in 2% Galactose YP medium N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A
PubMed external link Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47 Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Carbon source quality/availability YPD medium (15h) (diauxic shift) -3.02581027400131
Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Carbon source quality/availability YPD medium (36h) (post-diauxic shift) -2.63739872389855
Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Unstressed log-phase growth (control) YPD medium (9h) control -1.7145700017606
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 15h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -8.14441047222082
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Carbon source quality/availability RNA extraction at 36h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -6.22208767486473
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 9h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -3.28198808611587