S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Bas1p	YGR204W	PubMed Denis V et al., Molecular microbiology, 1998 Nov;30(3):557-66	Indirect	Northern blot - wt vs TF mutant	Positive	L3079	Unstressed log-phase growth (control)	SD media+adenine, mid-exponential	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	L3079	Unstressed log-phase growth (control)	SD media, mid-exponential	N/A
			Indirect	Proteomics - wt vs TF mutant	Positive	L3079	Unstressed log-phase growth (control)	SD media, mid-exponential	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Nitrogen source quality/availability	Minimal B medium upon glycine removal	N/A
		PubMed Joo YJ et al., Eukaryotic cell, 2009 Aug;8(8):1268-77	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	SC medium w/o histidine	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	1.176143446035
		PubMed Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	SK1	Unstressed log-phase growth (control)	Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h.	0.452421133795891
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	SK1	Cell cycle/morphology	Cells were grown in YPA for 13.5–14 hr at 30°, harvested, resuspended in 2% potassium acetate, and sporulated at 30°. Then, 15 OD600 units of cells were collected at 4 hr in meiosis for RNAseq. Transcription factor gene deletion.	0.452421133795891