Yeastract
YEASTRACT+ INESC-ID IST IBB
Home > Go Back > View Contact/Credits     Tutorial     Help

 

Back to top top

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rph1p YHR080C PubMed external link Schroeder EA et al., Cell metabolism, 2013 Jun 4;17(6):954-964Schroeder EA et al., Cell metabolism, 2013 Jun 4;17(6):954-964 Indirect Microarray analysis - wt vs TF mutant Positive S288c Stress Addition of 50mM menadione or ethanol N/A
PubMed external link Fang W et al., Cell reports, 2022 Apr 12;39(2):110672Fang W et al., Cell reports, 2022 Apr 12;39(2):110672 Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD. Transcription factor gene deletion. -0.385643721049245
Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD with switch to SL minimal medium for 1h. Transcription factor gene deletion. -0.22393875756529
Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD with switch to SL minimal medium for 3h. Transcription factor gene deletion. -0.395529573305186
PubMed external link Couvillion M et al., eLife, 2022 May 16;11():Couvillion M et al., eLife, 2022 May 16;11(): Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Unstressed log-phase growth (control) Overnight cultures grown in YPD medium were diluted to OD600 = 0.05 in 1 L YPD and incubated at 30 °C with 200 rpm shaking to mid-log phase (OD600 = 0.6–0.8). Transcription factor gene deletion. -0.611445326120789