Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rph1p YHR171W PubMed external link Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346Cipollina C et al., Microbiology (Reading, England), 2008 Jan;154(Pt 1):337-346 Indirect Microarray analysis - WT vs TF Deletion Negative SLY34 Unstressed log-phase growth (control) Grown in rich medium (YPD) at 30 °C to log phase. Transcription factor gene deletion. -0.667139
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.48673187953619
PubMed external link Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62Liang CY et al., Molecular biology of the cell, 2013 Oct;24(20):3251-62 Indirect Microarray analysis - wt vs TF mutant Negative S288c Unstressed log-phase growth (control) YPD 30.C N/A
PubMed external link Bernard A et al., Current biology : CB, 2015 Mar 2;25(5):546-55Bernard A et al., Current biology : CB, 2015 Mar 2;25(5):546-55 Indirect RT-PCR - wt vs TF mutant Negative S288c Unstressed log-phase growth (control) YPD N/A
PubMed external link Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122Bernard A et al., Autophagy, 2015 Nov 2;11(11):2114-2122 Indirect RT-PCR - wt vs TF mutant Negative S288c Unstressed log-phase growth (control) mid-log phase - YPD N/A
PubMed external link Wang J et al., Scientific reports, 2017 Feb 2;7():41850Wang J et al., Scientific reports, 2017 Feb 2;7():41850 Indirect RT-PCR - wt vs TF overexpression Negative JKM179 Stress YPD + methyl-methane sulphonate (MMS) N/A
PubMed external link Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373 Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Carbon source quality/availability Steady state carbon-limited chemostat cultures operated at a dilution rate of 0.05 per h by continuous addition of medium (feed concentration of glucose, 10 g/liter) at 30°C. pH controlled at 5, aerated with 0.5 volume of air/volume of liquid/min and with 800 rpm agitation. Transcription factor gene deletion. -0.553647178164386
Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Carbon source quality/availability Ethanol medium - Overexpression media lacked leucine to ensure plasmid selection. The cultures grown for 70 h in ethanol medium were diluted twice with a fresh medium to ensure continuous growth. -0.393395330909484
Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Unstressed log-phase growth (control) Grown in YPD to OD600 of 0.8 at 30 ºC. Transcription factor gene deletion. -0.553647178164386
Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Nitrogen source quality/availability Grown in YPD to OD600 of 0.8 at 30 ºC. Treated with rapamycin for 2h (100 nM). Transcription factor gene deletion. -0.393395330909484
PubMed external link Fang W et al., Cell reports, 2022 Apr 12;39(2):110672Fang W et al., Cell reports, 2022 Apr 12;39(2):110672 Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Carbon source quality/availability Yeast cells grown to log phase in YPL medium from 0.1 OD. Transcription factor gene deletion. -0.544415329442741