S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Flo8p	YIR019C	PubMed Rupp S et al., The EMBO journal, 1999 Mar 1;18(5):1257-69	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	SD medium	N/A
		PubMed Gagiano M et al., Journal of bacteriology, 1999 Oct;181(20):6497-508	Indirect	lacZ - wt vs TF overexpression	Positive	S288c	Unstressed log-phase growth (control)	SCD (2% glucose) medium	N/A
		PubMed Kobayashi O et al., Current genetics, 1999 Nov;36(5):256-61	Indirect	Microarray analysis - WT vs TF Deletion	Positive	YF191	Unstressed log-phase growth (control)	Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h.	N/A
		PubMed van Dyk D et al., Genetics, 2005 Jan;169(1):91-106	Indirect	Northern blot - wt vs TF overexpression	Positive	S288c	Unstressed log-phase growth (control)	SCD medium	N/A
		PubMed Borneman AR et al., Genes & development, 2006 Feb 15;20(4):435-48	Direct	Chip-on-chip	N/A	S288c	Nitrogen source quality/availability	Low nitrogen (SLAD) medium	N/A
		PubMed Bester MC et al., Current genetics, 2006 Jun;49(6):375-83	Indirect	Northern blot - wt vs TF overexpression	Positive	S288c	Carbon source quality/availability	cells grown to stationary phase in synthetic medium	N/A
		PubMed Chen H et al., Genes & development, 2006 May 1;20(9):1150-61	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Stress	cells grown to mid-exponential phase in synthetic medium incubated 4h with aromatic alcohols (phenylethanol and tryptophol)	N/A
		PubMed Barrales RR et al., Genetics, 2008 Jan;178(1):145-56	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Van Mulders SE et al., FEMS yeast research, 2009 Mar;9(2):178-90	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Sahni N et al., PLoS pathogens, 2009 Oct;5(10):e1000601	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Chavel CA et al., PLoS genetics, 2010 Mar 19;6(3):e1000883	Indirect	RT-PCR - wt vs TF mutant	Negative	SIGMA1278b	Carbon source quality/availability	wt vs DELTAflo8: total RNA was isolated from 25 ml cultures grown in YEP GAL for 8h.	N/A
		PubMed Judeh T et al., Nucleic acids research, 2013 Feb 1;41(3):1425-37	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	nitrogen stress	N/A
		PubMed Kim HY et al., Biochemical and biophysical research communications, 2014 Jun 27;449(2):202-7	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Carbon source quality/availability	0,05% glucose	N/A
		PubMed Scherz K et al., G3 (Bethesda, Md.), 2014 Jul 9;4(9):1671-80	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Cell cycle/morphology	DELTAflo8 grown for 96 hr in square 120-mm Â· 120-mm Petri dishes in Synthetic complete (SC) media and amino acids: adenine sulfate 20 mg/liter; uracil 38 mg/liter; Lhistidine 38 mg/liter; L-arginine 38 mg/liter; L-tryptophan 38 mg/liter; L-methoinine 38 mg/liter; L-tyrosine 15 mg/liter; L-leucine 57 mg/liter;L-isoleucine 57 mg/liter; L-lysine 57 mg/liter; L-phenylalanine 48 mg/liter; L-valine 57 mg	N/A
		PubMed Mayhew D et al., Molecular biology of the cell, 2014 Sep 1;25(17):2669-76	Direct	Multiplex calling card analysis	N/A	S288c	Nitrogen source quality/availability	Nitrogen starvation	N/A
		PubMed Goossens KV et al., mBio, 2015 Apr 14;6(2):	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	BY4742 WT and BY4742::FLO8 cells were grown in microgravity. Isotonic saline (0.9% (w/v) NaCl) solution at a concentration of 20 x 106 cells/ml and activated automatically by injecting 2 x YPD (1% (w/v) yeast extract, 2% (w/v) peptone	N/A
		PubMed Regenberg B et al., Proceedings. Biological sciences, 2016 Nov 16;283(1842):	Indirect	RNA FISH	Positive	S288c	Unstressed log-phase growth (control)	DELTAflo8	N/A