S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Swi4p	YIR019C	PubMed Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Chavel CA et al., PLoS genetics, 2010 Mar 19;6(3):e1000883	Indirect	RT-PCR - wt vs TF mutant	Negative	SIGMA1278b	Carbon source quality/availability	wt vs DELTAswi4: total RNA was isolated from 25 ml cultures grown in YEP GAL for 8h.	N/A
		PubMed Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	15Daub	Unstressed log-phase growth (control)	Yeast strains were grown in rich medium at 30°C to an optical density at 600 nm (OD600) of 0.5.	-0.608587123063584
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	15Daub	Unstressed log-phase growth (control)	Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition	-0.709658191071678
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	15Daub	Cell cycle/morphology	Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and immediately collected. Transcription factor gene deletion.	-0.608587123063584
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	15Daub	Cell cycle/morphology	Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and after 30 minutes they were collected. Transcription factor gene deletion.	-0.709658191071678
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	Unstressed log-phase growth (control)	YPD medium, 25.C	N/A