Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Yrr1p YIR035C PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.51090540678796
PubMed external link Wang X et al., Frontiers in microbiology, 2017;8():367Wang X et al., Frontiers in microbiology, 2017;8():367 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Unstressed log-phase growth (control) Cells harvested from 300 ml of culture (specific medium not clear) at an OD600 of 0.4. Transcription factor gene overexpression pAFT2-1up vs aft2Δ strain. 0.519192478349516
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Stress Grown in SD medium until log phase (OD600 ≈ 1.6-2.0) at 30 ºC, in the presence of 5 mM vanillin (inhibitor). Transcription factor gene deletion. 0.519192478349516
PubMed external link Rong-Mullins X et al., G3 (Bethesda, Md.), 2018 Feb 2;8(2):607-619Rong-Mullins X et al., G3 (Bethesda, Md.), 2018 Feb 2;8(2):607-619 Indirect RNA-seq (Yrr1 mutant (I775E) vs Yrr1 mutant (I775T)) Positive S96 Unstressed log-phase growth (control) YPD N/A
Indirect RNA-seq - wt vs TF mutant Negative S96 Unstressed log-phase growth (control) YPD N/A