Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Cbf1p YJL101C PubMed external link Dormer UH et al., The Journal of biological chemistry, 2000 Oct 20;275(42):32611-6Dormer UH et al., The Journal of biological chemistry, 2000 Oct 20;275(42):32611-6 Indirect lacZ - wt vs TF mutant Negative S288c Unstressed log-phase growth (control) SD medium N/A
PubMed external link Wheeler GL et al., Molecular microbiology, 2002 Oct;46(2):545-56Wheeler GL et al., Molecular microbiology, 2002 Oct;46(2):545-56 N/A N/A S288c N/A N/A N/A
PubMed external link Wheeler GL et al., The Journal of biological chemistry, 2003 Dec 12;278(50):49920-8Wheeler GL et al., The Journal of biological chemistry, 2003 Dec 12;278(50):49920-8 Indirect lacZ - wt vs TF mutant Negative S288c Stress exposure to 1-chloro-2,4-dintrobenzene (CDNB) N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) SC medium; mid-log phase N/A
PubMed external link Moxley JF et al., Proceedings of the National Academy of Sciences of the United States of America, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proceedings of the National Academy of Sciences of the United States of America, 2009 Apr 21;106(16):6477-82 Indirect Microarray analysis - wt vs TF mutant Negative BY4741 Unstressed log-phase growth (control) YNB media supplemented with 20 mg/L methionine N/A
PubMed external link Archer CT et al., Nucleic acids research, 2010 Jan;38(3):789-96Archer CT et al., Nucleic acids research, 2010 Jan;38(3):789-96 Indirect Microarray analysis - wt vs TF mutant Positive W303 (met4::GAL-MET4 met30DELTA cbf1DELTA) Carbon source quality/availability Shift from YEP + 2% raffinose to YEP + 2-3% galactose N/A
PubMed external link Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.62296073343508
PubMed external link Holland P et al., Nucleic acids research, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic acids research, 2019 Jun 4;47(10):4986-5000 Direct ChIP-exo N/A CEN.PK 113-5D Carbon source quality/availability Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h N/A
Direct ChIP-exo N/A CEN.PK 113-5D Carbon source quality/availability Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h N/A
Direct ChIP-exo N/A CEN.PK 113-5D Nitrogen source quality/availability Cells were cultivated in chemostats in nitrogen limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h N/A
Direct ChIP-exo N/A CEN.PK 113-5D Carbon source quality/availability Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A