S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Bas1p	YJR025C	PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-0.48946367285219
		PubMed Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Weiner A et al., PLoS biology, 2012;10(7):e1001369	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	Stress	Diamide exposure-45min	N/A
		PubMed Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	SK1	Unstressed log-phase growth (control)	Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h.	-0.599832117054825
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	SK1	Cell cycle/morphology	Cells were grown in YPA for 13.5–14 hr at 30°, harvested, resuspended in 2% potassium acetate, and sporulated at 30°. Then, 15 OD600 units of cells were collected at 4 hr in meiosis for RNAseq. Transcription factor gene deletion.	-0.599832117054825
		PubMed Groth B et al., International journal of molecular sciences, 2023 Apr 28;24(9):	Indirect	RT-PCR - wt vs TF mutant	Negative	BY4742	Ion/metal/phosphate/sulfur/vitamin availability	SC medium Pi depletion	N/A