S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Gln3p	YJR152W	PubMed Cooper TG et al., Journal of bacteriology, 1990 Feb;172(2):1014-8	Indirect	Northern blot - wt vs TF mutant	Positive	AM100	Nitrogen source quality/availability	Minimal glucose proline medium	N/A
		PubMed Cox KH et al., Yeast (Chichester, England), 1999 Jun 15;15(8):703-13	Indirect	Microarray analysis - wt vs TF mutant	Negative	TCY1	Nitrogen source quality/availability	Wickerham's minimal medium with 0,6% glucose and 0,1% of proline	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Hirasaki M et al., Gene, 2008 Feb 15;409(1-2):34-43	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Stress	YPAD + 14mM Caffeine 1h	N/A
		PubMed Georis I et al., The Journal of biological chemistry, 2008 Apr 4;283(14):8919-29	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	glutamine	N/A
		PubMed Georis I et al., Genetics, 2009 Mar;181(3):861-74	Direct	ChIP	N/A	25T0b, FV090, FV069, FV076, FV041, 03803c	Stress	YNB-glutamine medium treated with rapamycin (0.2 microg/ml) for 30 min	N/A
		PubMed Georis I et al., Genetics, 2009 Mar;181(3):861-74	Indirect	RT-PCR - wt vs TF mutant	Positive	FV022	Stress	YNB-glutamine medium treated with rapamycin (0.2 microg/ml) for 30 min	N/A
		PubMed Staschke KA et al., The Journal of biological chemistry, 2010 May 28;285(22):16893-911	Indirect	Microarray analysis - WT vs TF Deletion	Negative	WY798	Nitrogen source quality/availability	Grown in synthetic medium (SD) (2% dextrose, 0.5% ammonium sulfate) + amino acids w/o histidine (SC medium). Cells treated for 1 h with 200 nM rapamycin. Transcription factor gene deletion.	-0.57531233
		PubMed Georis I et al., Molecular and cellular biology, 2011 Jan;31(1):92-104	Direct	ChIP	N/A	S288c	Nitrogen source quality/availability	Rapamycin treatment	N/A
		PubMed Hernández H et al., Biochemical and biophysical research communications, 2011 Jan 21;404(3):859-64	Direct	ChIP	N/A	S288c	Nitrogen source quality/availability	3-aminotriazole	N/A
		PubMed Georis I et al., The Journal of biological chemistry, 2011 Dec 30;286(52):44897-912	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	Rapamycin treatment	N/A
		PubMed Fayyadkazan M et al., MicrobiologyOpen, 2014 Jun;3(3):271-87	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	cells grown in YPD medium and then treated with rapamycin o transferred to proline medium.	N/A
		PubMed Numamoto M et al., Journal of bioscience and bioengineering, 2015 Aug;120(2):121-7	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Stress	DELTAgln3 carrying or not a plasmid pRS316-GLN3S391D-Myc13 incubated in YPDA medium, supplemented with 5 mM caffeine for 30 min	N/A
		PubMed Fayyad-Kazan M et al., Molecular microbiology, 2016 Jan;99(2):360-79	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	cells were grown in am or ammonium (1%) + glutamine (0.1% w/v) medium.	N/A
		PubMed González J et al., Genetics, 2017 Nov;207(3):975-991	Direct	ChIP	N/A	CLA11-700	Nitrogen source quality/availability	Cells grown to OD600 0.5 on MM with 2% glucose with VIL (valine plus isoleucine plus leucine) (catabolic conditions)	N/A
		PubMed González J et al., Genetics, 2017 Nov;207(3):975-991	Direct	ChIP	N/A	CLA11-700	Nitrogen source quality/availability	Cells grown to OD600 0.5 on MM with 2% glucose with GABA	N/A
		PubMed Jonas F et al., Nucleic acids research, 2023 Jun 9;51(10):4831-4844	Indirect	Northern blot - wt vs TF double mutant	Positive	TCY36	Nitrogen source quality/availability	Wickerhams’s minimal medium + Rapamycin	N/A
			Indirect	Northern blot - wt vs TF double mutant	Positive	TCY36	Nitrogen source quality/availability	Wickerhams’s minimal medium with glutamate as nitrogen source + Rapamycin	N/A
			Indirect	Northern blot - wt vs TF double mutant	Positive	TCY36	Nitrogen source quality/availability	Wickerhams’s minimal medium with proline as nitrogen source	N/A
			Indirect	Northern blot - wt vs TF double mutant	Positive	TCY36	Nitrogen source quality/availability	Wickerhams’s minimal medium with proline as nitrogen source + Rapamycin	N/A
		PubMed Georis I et al., Yeast (Chichester, England), 2024 Apr;41(4):207-221	Indirect	RT-PCR - wt vs TF mutant	Positive	S288C	Unstressed log-phase growth (control)	YNB medium	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	S288C	Nitrogen source quality/availability	YNB medium + L-Methionine sulfoximine	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	S288C	Nitrogen source quality/availability	YNB medium - proline as sole nitrogen source	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	S288C	Nitrogen source quality/availability	YNB medium + Rapamycin	N/A
		PubMed Hurieva B et al., Nucleic acids research, 2024 Aug 27;52(15):8763-8777	Direct	ChEC-seq - wt vs TF truncations	N/A	BY4741	Unstressed log-phase growth (control)	SD medium	N/A