S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Gln3p	YKR034W	PubMed Soussi-Boudekou S et al., Molecular microbiology, 1997 Mar;23(6):1157-68	Indirect	lacZ - wt vs TF mutant	Positive	SIGMA1278b	Unstressed log-phase growth (control)	Minimal medium + NH4+	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	SIGMA1278b	Nitrogen source quality/availability	Minimal medium + proline	N/A
		PubMed Coffman JA et al., Journal of bacteriology, 1997 Jun;179(11):3416-29	Indirect	Northern blot - wt vs TF mutant	Positive	TCY1	Nitrogen source quality/availability	Minimal medium + glutamine	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	TCY1	Nitrogen source quality/availability	Minimal medium + proline	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	TCY1	Nitrogen source quality/availability	Minimal medium + proline	N/A
		PubMed Georis I et al., Molecular and cellular biology, 2009 Jul;29(13):3803-15	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	Exponential-phase cells cultivated in synthetic growth medium containing 0.1% proline as nitrogen source	N/A
		PubMed Neklesa TK et al., PLoS genetics, 2009 Jun;5(6):e1000515	Indirect	GFP - wt vs TF mutant	Positive	BY4743	Stress	15 hour growth in YPD medium containing 20 ng/mL of rapamycin	N/A
			Indirect	GFP - wt vs TF mutant	Positive	BY4743	Nitrogen source quality/availability	4 hour growth in N-free medium	N/A
		PubMed Staschke KA et al., The Journal of biological chemistry, 2010 May 28;285(22):16893-911	Indirect	Microarray analysis - WT vs TF Deletion	Negative	WY798	Nitrogen source quality/availability	Grown in synthetic medium (SD) (2% dextrose, 0.5% ammonium sulfate) + amino acids w/o histidine (SC medium). Cells treated for 1 h with 200 nM rapamycin. Transcription factor gene deletion.	-0.74846123
		PubMed Georis I et al., The Journal of biological chemistry, 2011 Dec 30;286(52):44897-912	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	Rapamycin treatment	N/A
		PubMed Milias-Argeitis A et al., PLoS computational biology, 2016 Mar;12(3):e1004784	Indirect	GFP - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	Pro to Gln shift	N/A
		PubMed Hurieva B et al., Nucleic acids research, 2024 Aug 27;52(15):8763-8777	Direct	ChEC-seq - wt vs TF truncations	N/A	BY4741	Unstressed log-phase growth (control)	SD medium	N/A