S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Msn4p	YLL026W	PubMed Boy-Marcotte E et al., Journal of bacteriology, 1998 Mar;180(5):1044-52	Indirect	Proteomics - wt vs TF mutant	Positive	W303	Unstressed log-phase growth (control)	YNB medium	N/A
		PubMed Epstein CB et al., Molecular biology of the cell, 2001 Feb;12(2):297-308	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD medium + 0,05M succinic acid, pH 4,0	N/A
		PubMed Amorós M et al., Molecular microbiology, 2001 Mar;39(6):1523-32	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	Heat shock	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	Osmotic stress	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	oxidative stress	N/A
		PubMed Hasan R et al., Molecular microbiology, 2002 Jul;45(1):233-41	Indirect	Proteomics - wt vs TF mutant	Positive	YPH98	Stress	Oxidative stess; cells grown in YNB medium to exponential phase exposed to 0.5 mM H2O2 for 30 min	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Seppä L et al., Molecular microbiology, 2004 Apr;52(1):217-25	N/A		N/A	S288c	N/A	N/A	N/A
		PubMed Kandror O et al., Molecular cell, 2004 Mar 26;13(6):771-81	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	Cold stress; Cells cultivated for 24h at 0ºC in YP growth medium with galactose as carbon source	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Eastmond DL et al., The Journal of biological chemistry, 2006 Oct 27;281(43):32909-21	Indirect	Microarray analysis - wt vs TF mutant	Positive	W303-1A	Stress	Cells grown in YPAD at 30.C to mid-log phase (A600 of 0.5) submitted to heat-shock (37.C, 15 min)	N/A
		PubMed Capaldi AP et al., Nature genetics, 2008 Nov;40(11):1300-6	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	YPD medium + 0,4M KCl (salt stress)	N/A
		PubMed Hazelwood LA et al., Applied and environmental microbiology, 2009 Nov;75(21):6876-85	Indirect	Microarray analysis - wt vs TF mutant	Positive	IMZ066	Nitrogen source quality/availability	Nitrogen-limiting (45 g/L glucose, 1 g/L (NH4)2SO4, 5.3 g/L K2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O)	N/A
		PubMed Watanabe D et al., Applied and environmental microbiology, 2011 Feb;77(3):934-41	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Complex industrial media	Sake mash on day 5	N/A
		PubMed Casado C et al., The Biochemical journal, 2011 Sep 15;438(3):523-33	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Stress	10 min shift to pH=8	N/A
		PubMed Kuang Z et al., eLife, 2017 Sep 26;6():Kuang Z et al., eLife, 2017 Sep 26;6():	Direct	ChIP-seq	N/A	BY5764	Unstressed log-phase growth (control)	YPD 30.C	N/A