S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Bas1p	YLR028C	PubMed Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Nitrogen source quality/availability	Minimal B medium upon glycine removal	N/A
		PubMed Tournu H et al., Eukaryotic cell, 2005 Oct;4(10):1687-96	Direct	ChIP	N/A	S288c	Unstressed log-phase growth (control)	Exponential-phase cells cultivated in SC growth medium without adenine	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	0.361038748602
		PubMed Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	SK1	Unstressed log-phase growth (control)	Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h.	-0.239183708482185
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	SK1	Cell cycle/morphology	Cells were grown in YPA for 13.5–14 hr at 30°, harvested, resuspended in 2% potassium acetate, and sporulated at 30°. Then, 15 OD600 units of cells were collected at 4 hr in meiosis for RNAseq. Transcription factor gene deletion.	-0.239183708482185