Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Yrr1p YLR046C PubMed external link Le Crom S et al., Molecular and cellular biology, 2002 Apr;22(8):2642-9Le Crom S et al., Molecular and cellular biology, 2002 Apr;22(8):2642-9 Indirect Microarray analysis - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) Yrr1-GAD chimera cells were cultivated in the presence of 2% galactose to induce protein expression N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Negative BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. -0.38717132468643
PubMed external link Gallagher JE et al., Genes & development, 2014 Feb 15;28(4):409-21Gallagher JE et al., Genes & development, 2014 Feb 15;28(4):409-21 Direct ChIP-seq N/A S288c Stress YPD medium + 4NQO N/A
PubMed external link Wang X et al., Frontiers in microbiology, 2017;8():367Wang X et al., Frontiers in microbiology, 2017;8():367 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Unstressed log-phase growth (control) Cells harvested from 300 ml of culture (specific medium not clear) at an OD600 of 0.4. Transcription factor gene overexpression pAFT2-1up vs aft2Δ strain. 0.913054521143074
Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Unstressed log-phase growth (control) Yeast cells were grown in rich medium (YPD), to an A600 of 0.8–1.0. -0.653709771389146
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Stress Grown in SD medium until log phase (OD600 ≈ 1.6-2.0) at 30 ºC, in the presence of 5 mM vanillin (inhibitor). Transcription factor gene deletion. 0.913054521143074
Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Unstressed log-phase growth (control) Grown in SD medium until log phase (OD600 ≈ 1.6-2.0) at 30 ºC. Transcription factor gene deletion. -0.653709771389146
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A