S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Gln3p	YLR142W	PubMed Hagen DC et al., Molecular and cellular biology, 1993 Nov;13(11):6866-75	Indirect	Northern blot - wt vs TF mutant	Positive	SIGMA1278b	Nitrogen source quality/availability	Wickerham's minimal medium + proline	N/A
		PubMed Steber CM et al., Proceedings of the National Academy of Sciences of the United States of America, 1995 Dec 19;92(26):12490-4	Indirect	Northern blot - wt vs TF mutant	Positive	TCY1	Nitrogen source quality/availability	Wickerham's minimal medium + GABA	N/A
		PubMed Cunningham TS et al., Journal of bacteriology, 1996 Jun;178(12):3470-9	Direct	EMSA	N/A	S288c	In vitro	in vitro	N/A
		PubMed Shamji AF et al., Current biology : CB, 2000 Dec 14-28;10(24):1574-81	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	30 min 50 nM treatment with rapamycin in YPD	N/A
		PubMed Saxena D et al., Eukaryotic cell, 2003 Jun;2(3):552-9	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Nitrogen source quality/availability	Glutamate - yeast cells were grown in minimal medium containing glutamate (Glt, 0.1%).	N/A
		PubMed Hirasaki M et al., Gene, 2008 Feb 15;409(1-2):34-43	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Stress	YPAD + 14mM Caffeine 1h	N/A
		PubMed Leverentz MK et al., The Journal of biological chemistry, 2009 Sep 4;284(36):24115-22	Direct	ChIP	N/A	S288c	N/A	N/A	N/A
		PubMed Staschke KA et al., The Journal of biological chemistry, 2010 May 28;285(22):16893-911	Indirect	Microarray analysis - WT vs TF Deletion	Negative	WY798	Nitrogen source quality/availability	Grown in synthetic medium (SD) (2% dextrose, 0.5% ammonium sulfate) + amino acids w/o histidine (SC medium). Cells treated for 1 h with 200 nM rapamycin. Transcription factor gene deletion.	-1.13750352
		PubMed Ponomarova O et al., Cell systems, 2017 Oct 25;5(4):345-357.e6	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	S90	Cell cycle/morphology	Second acidic phase (day 21): Giant colonies grown on GM solid agar (1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2) at room temperature; colonies harvested at day 21, corresponding to the second acidic phase.	-0.887905218170162
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	S90	Unstressed log-phase growth (control)	Grown in CDM35 at 30 ºC and harvested at OD600 of 1. Transcription factor gene deletion.	-0.887905218170162