Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Gln3p YLR155C PubMed external link Bon EP et al., Applied biochemistry and biotechnology, 1997 Spring;63-65():203-12Bon EP et al., Applied biochemistry and biotechnology, 1997 Spring;63-65():203-12 N/A N/A S288c N/A N/A N/A
PubMed external link Oliveira EM et al., Yeast (Chichester, England), 2003 Jan 15;20(1):31-7Oliveira EM et al., Yeast (Chichester, England), 2003 Jan 15;20(1):31-7 Indirect Northern blot - wt vs TF mutant Positive P40-1B Nitrogen source quality/availability Cells grown in YNBGlu medium with 0.2% proline as the sole nitrogen source N/A
Indirect Northern blot - wt vs TF mutant Positive P40-1B Nitrogen source quality/availability Nitrogen starvation; exponential cells grown in YNBGlu medium containing 0.2% proline as the sole nitrogen source washed and incubated in a 3% glucose solution for 2 h N/A
Indirect Northern blot - wt vs TF mutant Positive P40-1B Nitrogen source quality/availability Nitrogen starvation; exponential cells grown in YNBGlu medium containing 0.9% ammonium sulphate or 0.2% proline as the sole nitrogen source washed and incubated in a 3% glucose solution for 2 h N/A
Indirect Northern blot WT vs TF deletion mutant Positive FY1679-28C Nitrogen source quality/availability Cells grown in YNBGlu medium with 0.2% proline as the sole nitrogen source N/A
Indirect Northern blot WT vs TF deletion mutant Positive FY1679-28C Nitrogen source quality/availability Nitrogen starvation; exponential cells grown in YNBGlu medium containing 0.9% ammonium sulphate or 0.2% proline as the sole nitrogen source washed and incubated in a 3% glucose solution for 2 h N/A
PubMed external link Staschke KA et al., The Journal of biological chemistry, 2010 May 28;285(22):16893-911Staschke KA et al., The Journal of biological chemistry, 2010 May 28;285(22):16893-911 Indirect Microarray analysis - WT vs TF Deletion Negative WY798 Nitrogen source quality/availability Grown in synthetic medium (SD) (2% dextrose, 0.5% ammonium sulfate) + amino acids w/o histidine (SC medium). Cells treated for 1 h with 200 nM rapamycin. Transcription factor gene deletion. -1.11769504
PubMed external link Huang YC et al., RNA (New York, N.Y.), 2010 Nov;16(11):2085-93Huang YC et al., RNA (New York, N.Y.), 2010 Nov;16(11):2085-93 Indirect Northern blot - wt vs TF mutant Positive S288c Nitrogen source quality/availability Rapamycin treatment N/A
Indirect Northern blot - wt vs TF mutant Positive S288c Nitrogen source quality/availability Without NH4+ N/A
PubMed external link Ponomarova O et al., Cell systems, 2017 Oct 25;5(4):345-357.e6Ponomarova O et al., Cell systems, 2017 Oct 25;5(4):345-357.e6 Indirect RNA-seq analysis - WT vs TF Deletion Negative S90 Cell cycle/morphology Second acidic phase (day 21): Giant colonies grown on GM solid agar (1% yeast extract, 3% glycerol, 2% agar, 30 mM CaCl2) at room temperature; colonies harvested at day 21, corresponding to the second acidic phase. -0.672524740760073
Indirect RNA-seq analysis - WT vs TF Deletion Negative S90 Unstressed log-phase growth (control) Grown in CDM35 at 30 ºC and harvested at OD600 of 1. Transcription factor gene deletion. -0.672524740760073