S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Ace2p	YLR286C	PubMed Dohrmann PR et al., Genes & development, 1992 Jan;6(1):93-104	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Dohrmann PR et al., Molecular and cellular biology, 1996 Apr;16(4):1746-58	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	SC medium; mid-log phase	N/A
		PubMed Ozcan S et al., Molecular and cellular biology, 1996 Oct;16(10):5536-45	N/A		N/A	S288c	N/A	N/A	N/A
		PubMed Toone WM et al., The EMBO journal, 1995 Dec 1;14(23):5824-32	Indirect	Northern blot - wt vs TF mutant	Positive	W303	Unstressed log-phase growth (control)	YPD	N/A
		PubMed McBride HJ et al., The Journal of biological chemistry, 1999 Jul 23;274(30):21029-36	Direct	DNA footprinting	Positive	W303	Unstressed log-phase growth (control)	Exponential-phase cells cultivated in synthetic growth medium	N/A
		PubMed Madhani HD et al., Proceedings of the National Academy of Sciences of the United States of America, 1999 Oct 26;96(22):12530-5	Direct	ChIP	N/A	S288c	Cell cycle/morphology	Synchronized cells at G1 phase	N/A
		PubMed Doolin MT et al., Molecular microbiology, 2001 Apr;40(2):422-32	Indirect	Northern blot - wt vs TF mutant	Positive	H9	Unstressed log-phase growth (control)	Cells grown in YPD media to mid-logarithmic phase	N/A
		PubMed Simon I et al., Cell, 2001 Sep 21;106(6):697-708	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	Unstressed log-phase growth (control)	YPD medium; mid-log phase	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A	N/A	N/A
		PubMed Voth WP et al., The EMBO journal, 2007 Oct 17;26(20):4324-34	Direct	ChIP	N/A	S288c	N/A	N/A	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	5.0526857486129
		PubMed Parnell EJ et al., The Journal of biological chemistry, 2014 Dec 19;289(51):35431-7	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	SC medium	N/A
		PubMed Wu Y et al., FEMS yeast research, 2016 May;16(3):	Indirect	Gene overexpression	Positive	S288c	Unstressed log-phase growth (control)	YPD	N/A
		PubMed Mostovoy Y et al., Genome biology and evolution, 2016 Jun 27;8(6):1748-61	Indirect	RT-PCR - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD	N/A
		PubMed Lupo O et al., G3 (Bethesda, Md.), 2021 Feb 9;11(2):	Direct	ChEC-seq	N/A	BY4743	Unstressed log-phase growth (control)	YPD medium	N/A
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	Unstressed log-phase growth (control)	YPD medium, 25.C	N/A