S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Pho2p	YML123C	PubMed Zhu H et al., Rapid communications in mass spectrometry : RCM, 2002;16(22):2115-23	Indirect	lacZ - wt vs TF mutant	Positive	S288c	Stress	Alkaline pH stress; Cells cultivated in SC medium at pH 8	N/A
		PubMed Springer M et al., PLoS biology, 2003 Nov;1(2):E28	Indirect	Northern blot - wt vs TF mutant	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Cells were grown in synthetic medium with dextrose (SD) and in high-, intermediate-, or no-phosphate.	N/A
		PubMed Pinson B et al., Genes & development, 2009 Jun 15;23(12):1399-407	Direct	ChIP	N/A	ade16 ade17 double mutant	Unstressed log-phase growth (control)	SDcasaWAU medium	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	5.7040399701935
		PubMed He BZ et al., eLife, 2017 May 9;6():He BZ et al., eLife, 2017 May 9;6():	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Unstressed log-phase growth (control)	100 ml of cell culture grown to OD600nm (600 nm) of 1.5.	10.895201185849
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Grown in phosphate-free SC medium (Phosphate starvation) at 30°C with shaking. All transcriptional profiling experiments were done in the pho80∆ background. Transcription factor gene deletion.	10.895201185849
		PubMed Chow J et al., mSphere, 2019 Mar 6;4(2):	Indirect	Northern blot - wt vs TF mutant	Positive	BY4742	Nitrogen source quality/availability	SDcasaWU, adenine depletion	N/A
		PubMed Huang Z et al., Metallomics : integrated biometal science, 2023 Dec 9;15(12):	Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Unstressed log-phase growth (control)	YPD medium	N/A
			Indirect	RT-PCR - wt vs TF mutant	Positive	BY4741	Stress	YPD medium + 100microgram/ml Al3+	N/A