S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Yrr1p	YMR145C	PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-0.81050325997011
		PubMed Wang X et al., Frontiers in microbiology, 2017;8():367	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Unstressed log-phase growth (control)	Cells harvested from 300 ml of culture (specific medium not clear) at an OD600 of 0.4. Transcription factor gene overexpression pAFT2-1up vs aft2Δ strain.	-0.643223269815399
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	BY4741	Stress	Grown in SD medium until log phase (OD600 ≈ 1.6-2.0) at 30 ºC, in the presence of 5 mM vanillin (inhibitor). Transcription factor gene deletion.	-0.643223269815399
		PubMed Rong-Mullins X et al., G3 (Bethesda, Md.), 2018 Feb 2;8(2):607-619	Indirect	RNA-seq (Yrr1 mutant (I775E) vs Yrr1 mutant (I775T))	Negative	S96	Unstressed log-phase growth (control)	YPD	N/A
			Indirect	RNA-seq (Yrr1 mutant (I775E) vs Yrr1 mutant (I775T))	Negative	S96	Stress	YPD medium with 0.25 microg/ml 4NQO	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	S96	Unstressed log-phase growth (control)	YPD	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	S96	Stress	YPD medium with 0.25 microg/ml 4NQO	N/A
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	Unstressed log-phase growth (control)	YPD medium, 25.C	N/A