PubMed
Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77
Indirect
Microarray analysis - WT vs TF Deletion
Positive
BY4741; S288C; R1158
Unstressed log-phase growth (control)
Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.
0.62478019174721
PubMed
Aymoz D et al., Molecular systems biology, 2018 Apr 25;14(4):e8024Aymoz D et al., Molecular systems biology, 2018 Apr 25;14(4):e8024
Direct
ChIP
N/A
W303
Cell cycle/morphology
Yeast cultures were grown to early log phase (A660 0.4-0.6) and then subjected to 1 microM alfa-factor
N/A
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314
Direct
ChIP-exo
N/A
BY4741
Unstressed log-phase growth (control)
YPD medium, 25.C
N/A
PubMed
Ensinck I et al., eLife, 2023 Jul 25;12():Ensinck I et al., eLife, 2023 Jul 25;12():
Indirect
RNA-seq analysis - WT vs TF Deletion
Negative
FW1511
Cell cycle/morphology
6 h: RNA-seq performed under sporulation conditions in SK1 background. Overnight YPD cultures diluted to OD600 0.5 in pre-sporulation medium (SPS: 0.5% yeast extract, 1% peptone, 0.17% YNB, 1% potassium acetate, 0.5% ammonium sulfate, 1% glucose) for 16-18 h at 30°C. Washed and transferred to 1% potassium acetate (SPO medium) at OD600 1.9. Samples collected at 6 h post-transfer to SPO.
