Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Rap1p YOR178C PubMed external link Kasahara K et al., Molecular and cellular biology, 2007 Oct;27(19):6686-705Kasahara K et al., Molecular and cellular biology, 2007 Oct;27(19):6686-705 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD N/A
PubMed external link Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329Lavoie H et al., PLoS biology, 2010 Mar 9;8(3):e1000329 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD N/A
PubMed external link Platt JM et al., Genes & development, 2013 Jun 15;27(12):1406-20Platt JM et al., Genes & development, 2013 Jun 15;27(12):1406-20 Direct ChIP N/A S288c Carbon source quality/availability Senescence N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A
PubMed external link Buechel ER et al., FEBS letters, 2024 Jan;598(2):169-186Buechel ER et al., FEBS letters, 2024 Jan;598(2):169-186 Direct ChEC-seq2 N/A BY4741 Unstressed log-phase growth (control) Control N/A
PubMed external link Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47Byun JY et al., Microbial cell factories, 2025 Feb 24;24(1):47 Indirect RNA-seq - wt vs TF overexpression Positive CEN.PK2-1D Carbon source quality/availability YPD medium (15h) (diauxic shift) 1.47009796659916
Indirect RNA-seq - wt vs TF overexpression Negative CEN.PK2-1D Unstressed log-phase growth (control) YPD medium (9h) control -1.29426866930707
Indirect RNA-seq analysis - TF Over-expression vs WT Positive cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 15h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. 2.77040705507926
Indirect RNA-seq analysis - TF Over-expression vs WT Negative cen.pk-2-1C Unstressed log-phase growth (control) RNA extraction at 9h. Medium: YPD (1% yeast extract, 2% peptone, 2% glucose) or synthetic complete (SC) medium supplemented as required for auxotrophic markers. Temperature: 30°C, aerobic shaking. Growth phase: exponential or stationary phase. -2.45252640513027